George Githinji

Scalable Workflows and Reproducible Data Analysis for Genomics.Strozzi, F. Janssen, R. Wurmus, R. Crusoe, M. R. Githinji, G. Di Tommaso, P. Belhachemi, D. Moller, S. Smant, G. de Ligt, J. Prins, P.
Methods Mol Biol, (2019). 1910:723-745

Journal of Open Source Software (JOSS): design and first-year review.Smith, A. M. Niemeyer, K. E. Katz, D. S. Barba, L. A. Githinji, G. Gymrek, M. Huff, K. D. Madan, C. R. Mayes, A. C. Moerman, K. M. Prins, P. Ram, K. Rokem, A. Teal, T. K. Guimera, R. V. Vanderplas, J. T.
PeerJ Prepr, (2018). 4:e147

Evaluating the performance of tools used to call minority variants from whole genome short-read data.Said Mohammed, K. Kibinge, N. Prins, P. Agoti, C. N. Cotten, M. Nokes, D. J. Brand, S. Githinji, G.
Wellcome Open Res, (2018). 3:21

A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections.Githinji, G. Bull, P. C.
Wellcome Open Res, (2017). 2:86

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks.Githinji, G. Agoti, C. Munywoki, P. Bett, A. Kellam, P. Cotton, M. Nokes, D. J.
Virus Evol, (2017). 3:

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.Agoti, C. N. Munywoki, P. K. Phan, M. V. T. Otieno, J. R. Kamau, E. Bett, A. Kombe, I. Githinji, G. Medley, G. F. Cane, P. A. Kellam, P. Cotton, M. Nokes, D. J.
Virus Evol, (2017). 3:

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.Agoti, C. N. Munywoki, P. K. Phan, M. V. T. Otieno, J. R. Kamau, E. Bett, A. Kombe, I. Githinji, G. Medley, G. F. Cane, P. A. Kellam, P. Cotten, M. Nokes, D. J.
Virus Evol, (2017). 3:vex006

Prognostic indicators of life-threatening malaria are associated with distinct parasite variant antigen profiles.Warimwe, G. M. Fegan, G. Musyoki, J. N. Newton, C. R. Opiyo, M. Githinji, G. Andisi, C. Menza, F. Kitsao, B. Marsh, K. Bull, P. C.
Sci Transl Med, (2012). 4:129ra45

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.Bonnal, R. J. Aerts, J. Githinji, G. Goto, N. MacLean, D. Miller, C. A. Mishima, H. Pagani, M. Ramirez-Gonzalez, R. Smant, G. Strozzi, F. Syme, R. Vos, R. Wennblom, T. J. Woodcroft, B. J. Katayama, T. Prins, P.
Bioinformatics, (2012). 28:1035-7