James Nokes

Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya.Otieno, G. P. Murunga, N. Agoti, C. N. Gallagher, K. E. Awori, J. O. Nokes, D. J.
Wellcome Open Res, (2020). 5:150

Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya.Mweu, M. M. Murunga, N. Otieno, J. W. Nokes, D. J.
Wellcome Open Res, (2020). 5:155

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17.Kamau, E. Otieno, J. R. Murunga, N. Oketch, J. W. Ngoi, J. M. de Laurent, Z. R. Mwema, A. Nyiro, J. U. Agoti, C. N. Nokes, D. J.
Virus Evol, (2020). 6:veaa050

Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.Mwanga, M. J. Owor, B. E. Ochieng, J. B. Ngama, M. H. Ogwel, B. Onyango, C. Juma, J. Njeru, R. Gicheru, E. Otieno, G. P. Khagayi, S. Agoti, C. N. Bigogo, G. M. Omore, R. Addo, O. Y. Mapaseka, S. Tate, J. E. Parashar, U. D. Hunsperger, E. Verani, J. R. Breiman, R. F. Nokes, D. J.
BMC Infect Dis, (2020). 20:504

Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16.Abidha, C. A. Nyiro, J. Kamau, E. Abdullahi, O. Nokes, D. J. Agoti, C. N.
Virus Evol, (2020). 6:veaa031

Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households.Brand, S. P. Munywoki, P. Walumbe, D. Keeling, M. J. Nokes, D. J.
Elife, (2020). 9:

Model evaluation of target product profiles of an infant vaccine against respiratory syncytial virus (RSV) in a developed country setting.Kinyanjui, T. Pan-Ngum, W. Saralamba, S. Taylor, S. White, L. Nokes, D. J.
Vaccine X, (2020). 4:100055

Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.Kamau, E. Oketch, J. W. de Laurent, Z. R. Phan, M. V. T. Agoti, C. N. Nokes, D. J. Cotten, M.
BMC Genomics, (2020). 21:83

Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017.Owuor, D. C. Ngoi, J. M. Otieno, J. R. Otieno, G. P. Nyasimi, F. M. Nyiro, J. U. Agoti, C. N. Chaves, S. S. Nokes, D. J.
Influenza Other Respir Viruses, (2020). 14:320-330

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.Kamau, E. Oketch, J. W. de Laurent, Z. R. Phan, M. V. T. Agoti, C. N. Nokes, D. J. Cotten, M.
BMC Genomics, (2020). 21:5

Impact of the Introduction of Rotavirus Vaccine on Hospital Admissions for Diarrhea Among Children in Kenya: A Controlled Interrupted Time-Series Analysis.Otieno, G. P. Bottomley, C. Khagayi, S. Adetifa, I. Ngama, M. Omore, R. Ogwel, B. Owor, B. E. Bigogo, G. Ochieng, J. B. Onyango, C. Juma, J. Mwenda, J. Tabu, C. Tate, J. E. Addo, Y. Britton, T. Parashar, U. D. Breiman, R. F. Verani, J. R. Nokes, D. J.
Clin Infect Dis, (2020). 70:2306-2313

Effectiveness of Monovalent Rotavirus Vaccine Against Hospitalization With Acute Rotavirus Gastroenteritis in Kenyan Children.Khagayi, S. Omore, R. Otieno, G. P. Ogwel, B. Ochieng, J. B. Juma, J. Apondi, E. Bigogo, G. Onyango, C. Ngama, M. Njeru, R. Owor, B. E. Mwanga, M. J. Addo, Y. Tabu, C. Amwayi, A. Mwenda, J. M. Tate, J. E. Parashar, U. D. Breiman, R. F. Nokes, D. J. Verani, J. R.
Clin Infect Dis, (2020). 70:2298-2305

Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya.Kamau, E. Luka, M. M. de Laurent, Z. R. Adema, I. Agoti, C. N. Nokes, D. J.
Microbiol Resour Announc, (2019). 8:

Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors.Kiti, M. C. Melegaro, A. Cattuto, C. Nokes, D. J.
Wellcome Open Res, (2019). 4:84

Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016.Oketch, J. W. Kamau, E. Otieno, G. P. Otieno, J. R. Agoti, C. N. Nokes, D. J.
BMC Infect Dis, (2019). 19:757

Author Correction: Airway response to respiratory syncytial virus has incidental antibacterial effects.Sande, C. J. Njunge, J. M. Ngoi, J. M. Mutunga, M. N. Chege, T. Gicheru, E. T. Gardiner, E. M. Gwela, A. Green, C. A. Drysdale, S. B. Berkley, J. A. Nokes, D. J. Pollard, A. J.
Nat Commun, (2019). 10:3291

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.Agoti, C. N. Phan, M. V. T. Munywoki, P. K. Githinji, G. Medley, G. F. Cane, P. A. Kellam, P. Cotten, M. Nokes, D. J.
Sci Rep, (2019). 9:10076

Airway response to respiratory syncytial virus has incidental antibacterial effects.Sande, C. J. Njunge, J. M. Mwongeli Ngoi, J. Mutunga, M. N. Chege, T. Gicheru, E. T. Gardiner, E. M. Gwela, A. Green, C. A. Drysdale, S. B. Berkley, J. A. Nokes, D. J. Pollard, A. J.
Nat Commun, (2019). 10:2218

Agreement between ELISA and plaque reduction neutralisation assay in Detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya.Nyiro, J. U. Kiyuka, P. K. Mutunga, M. N. Sande, C. J. Munywoki, P. K. Scott, J. A. G. Nokes, D. J.
Wellcome Open Res, (2019). 4:33

Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya.Kamau, E. Agoti, C. N. Ngoi, J. M. de Laurent, Z. R. Gitonga, J. Cotten, M. Phan, M. V. T. Nokes, D. J. Delwart, E. Sanders, E. Warimwe, G. M.
Microbiol Resour Announc, (2019). 8: