James Nokes/Sci Rep

Local patterns of spread of influenza A H3N2 virus in coastal Kenya over a 1-year period revealed through virus sequence data.Owuor, D. C. Ngoi, J. M. Nyasimi, F. M. Murunga, N. Nyiro, J. U. Chaves, S. S. Nokes, D. J. Agoti, C. N.
Sci Rep, (2024). 14:23426

Spatio-temporal distribution of rhinovirus types in Kenya: a retrospective analysis, 2014.Morobe, J. M. Kamau, E. Luka, M. M. Murunga, N. Lewa, C. Mutunga, M. Bigogo, G. Otieno, N. Nyawanda, B. Onyango, C. Nokes, D. J. Agoti, C. N. Munywoki, P. K.
Sci Rep, (2024). 14:22298

Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa.Owuor, D. C. de Laurent, Z. R. Oketch, J. W. Murunga, N. Otieno, J. R. Nabakooza, G. Chaves, S. S. Nokes, D. J. Agoti, C. N.
Sci Rep, (2024). 14:18987

Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons.Owuor, D. C. de Laurent, Z. R. Nyawanda, B. O. Emukule, G. O. Kondor, R. Barnes, J. R. Nokes, D. J. Agoti, C. N. Chaves, S. S.
Sci Rep, (2023). 13:22342

Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains.Nabakooza, G. Owuor, D. C. de Laurent, Z. R. Galiwango, R. Owor, N. Kayiwa, J. T. Jjingo, D. Agoti, C. N. Nokes, D. J. Kateete, D. P. Kitayimbwa, J. M. Frost, S. D. W. Lutwama, J. J.
Sci Rep, (2023). 13:5516

Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya.Phan, M. V. T. Agoti, C. N. Munywoki, P. K. Otieno, G. P. Ngama, M. Kellam, P. Cotten, M. Nokes, D. J.
Sci Rep, (2022). 12:202

Individual's daily behaviour and intergenerational mixing in different social contexts of Kenya.Del Fava, E. Adema, I. Kiti, M. C. Poletti, P. Merler, S. Nokes, D. J. Manfredi, P. Melegaro, A.
Sci Rep, (2021). 11:21589

Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission.Kombe, I. K. Agoti, C. N. Munywoki, P. K. Baguelin, M. Nokes, D. J. Medley, G. F.
Sci Rep, (2021). 11:1463

Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on.Kamau, E. Otieno, J. R. Lewa, C. S. Mwema, A. Murunga, N. Nokes, D. J. Agoti, C. N.
Sci Rep, (2020). 10:21176

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.Agoti, C. N. Phan, M. V. T. Munywoki, P. K. Githinji, G. Medley, G. F. Cane, P. A. Kellam, P. Cotten, M. Nokes, D. J.
Sci Rep, (2019). 9:10076

Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics.Sande, C. J. Mutunga, M. Muteti, J. Berkley, J. A. Nokes, D. J. Njunge, J.
Sci Rep, (2018). 8:13814

Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children.Morpeth, S. C. Munywoki, P. Hammitt, L. L. Bett, A. Bottomley, C. Onyango, C. O. Murdoch, D. R. Nokes, D. J. Scott, J. A. G.
Sci Rep, (2018). 8:11030