James Nokes/Virus Evol

Emergence and transmission dynamics of the FY.4 Omicron variant in Kenya.Musundi, S. Mwanga, M. Lambisia, A. Morobe, J. M. Murunga, N. Moraa, E. Ndwiga, L. Cheruiyot, R. Musyoki, J. Mutunga, M. Guzman-Rincon, L. M. Sande, C. Mwangangi, J. Bejon, P. Ochola-Oyier, L. I. Nokes, D. J. Agoti, C. N. Nyiro, J. Githinji, G.
Virus Evol, (2025). 11:veaf035

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012-8.Makori, T. O. Bargul, J. L. Lambisia, A. W. Mwanga, M. J. Murunga, N. de Laurent, Z. R. Lewa, C. S. Mutunga, M. Kellam, P. Cotten, M. Nokes, D. J. Phan, M. Agoti, C. N.
Virus Evol, (2023). 9:vead025

Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013-2022).Lambisia, A. W. Makori, T. O. Mutunga, M. Cheruiyot, R. Murunga, N. Quick, J. Githinji, G. Nokes, D. J. Houldcroft, C. J. Agoti, C. N.
Virus Evol, (2023). 9:vead023

Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season.Nyasimi, F. M. Owuor, D. C. Ngoi, J. M. Mwihuri, A. G. Otieno, G. P. Otieno, J. R. Githinji, G. Nyiro, J. U. Nokes, D. J. Agoti, C. N.
Virus Evol, (2020). 6:veaa045

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17.Kamau, E. Otieno, J. R. Murunga, N. Oketch, J. W. Ngoi, J. M. de Laurent, Z. R. Mwema, A. Nyiro, J. U. Agoti, C. N. Nokes, D. J.
Virus Evol, (2020). 6:veaa050

Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-16.Abidha, C. A. Nyiro, J. Kamau, E. Abdullahi, O. Nokes, D. J. Agoti, C. N.
Virus Evol, (2020). 6:veaa031

Erratum: Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno, J. R. Kamau, E. M. Oketch, J. W. Ngoi, J. M. Gichuki, A. M. Binter, S. Otieno, G. P. Ngama, M. Agoti, C. N. Cane, P. A. Kellam, P. Cotten, M. Lemey, P. Nokes, D. J.
Virus Evol, (2018). 4:vey036

Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains.Otieno, J. R. Kamau, E. M. Oketch, J. W. Ngoi, J. M. Gichuki, A. M. Binter, S. Otieno, G. P. Ngama, M. Agoti, C. N. Cane, P. A. Kellam, P. Cotten, M. Lemey, P. Nokes, D. J.
Virus Evol, (2018). 4:vey027

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks.Githinji, G. Agoti, C. Munywoki, P. Bett, A. Kellam, P. Cotton, M. Nokes, D. J.
Virus Evol, (2017). 3:

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.Agoti, C. N. Munywoki, P. K. Phan, M. V. T. Otieno, J. R. Kamau, E. Bett, A. Kombe, I. Githinji, G. Medley, G. F. Cane, P. A. Kellam, P. Cotton, M. Nokes, D. J.
Virus Evol, (2017). 3:

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya.Otieno, J. R. Agoti, C. N. Gitahi, C. W. Bett, A. Ngama, M. Medley, G. F. Cane, P. A. Nokes, D. J.
Virus Evol, (2017). 3:

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.Agoti, C. N. Munywoki, P. K. Phan, M. V. T. Otieno, J. R. Kamau, E. Bett, A. Kombe, I. Githinji, G. Medley, G. F. Cane, P. A. Kellam, P. Cotten, M. Nokes, D. J.
Virus Evol, (2017). 3:vex006