Nokes DJ

Cryptosporidium parvum virus 1 genome sequences from pediatric diarrhea cases in coastal Kenya.Agoti, C. N. Njeru, R. Mwanga, M. Mutunga, M. Shah, S. P. Chu, T. Y. Nokes, D. J. Cotten, M. Phan, M. V. T.
Microbiol Resour Announc, (2025). 14:e0034925

Emergence and transmission dynamics of the FY.4 Omicron variant in Kenya.Musundi, S. Mwanga, M. Lambisia, A. Morobe, J. M. Murunga, N. Moraa, E. Ndwiga, L. Cheruiyot, R. Musyoki, J. Mutunga, M. Guzman-Rincon, L. M. Sande, C. Mwangangi, J. Bejon, P. Ochola-Oyier, L. I. Nokes, D. J. Agoti, C. N. Nyiro, J. Githinji, G.
Virus Evol, (2025). 11:veaf035

Profile: The Kenya Multi-Site Serosurveillance (KEMIS) collaboration.Kagucia, E. W. Voller, S. Ziraba, A. K. Bigogo, G. Munywoki, P. K. Makobu, K. Nokes, D. J. Nyagwange, J. Orlendo, C. Akech, D. Sigilai, A. Onyango, C. Juma, B. Herman-Roloff, A. Munyua, P. Apondi, C. Lidechi, S. Audi, A. Ouma, A. Aol, G. Misore, T. Nasimiyu, C. Onyango, D. Lo, T. Kasera, K. Jalang'o, R. Kingwara, L. Adetifa, I. Etyang, A. O. Warimwe, G. Agweyu, A. Scott, J. A. G.
Gates Open Res, (2025). 8:60

Prevalence and Predictors of Adverse Birth Outcomes and Their Implications in Assessing the Safety of New Maternal Vaccines in Kenya.Nyiro, J. U. Bukusi, E. Mureithi, M. W. Walumbe, D. Nyaguara, A. Kipkoech, C. Nyawanda, B. Bigogo, G. Otieno, N. Aol, G. Audi, A. Murunga, N. Berkley, J. A. Nokes, D. J. Munywoki, P. K.
Pediatr Infect Dis J, (2025). 44:S114-S118

Characterising the asynchronous resurgence of common respiratory viruses following the COVID-19 pandemic.Zhao, C. Zhang, T. Guo, L. Sun, S. Miao, Y. Yung, C. F. Tomlinson, J. Stolyarov, K. Shchomak, Z. Poovorawan, Y. Nokes, D. J. Munoz-Almagro, C. Mandelboim, M. Keck, J. W. Langley, J. M. Heikkinen, T. Deng, J. Colson, P. Chakhunashvili, G. Caballero, M. T. Bont, L. Feikin, D. R. Nair, H. Wang, X. Li, Y. Respiratory Virus Global Epidemiology, Network
Nat Commun, (2025). 16:1610

Local patterns of spread of influenza A H3N2 virus in coastal Kenya over a 1-year period revealed through virus sequence data.Owuor, D. C. Ngoi, J. M. Nyasimi, F. M. Murunga, N. Nyiro, J. U. Chaves, S. S. Nokes, D. J. Agoti, C. N.
Sci Rep, (2024). 14:23426

Spatio-temporal distribution of rhinovirus types in Kenya: a retrospective analysis, 2014.Morobe, J. M. Kamau, E. Luka, M. M. Murunga, N. Lewa, C. Mutunga, M. Bigogo, G. Otieno, N. Nyawanda, B. Onyango, C. Nokes, D. J. Agoti, C. N. Munywoki, P. K.
Sci Rep, (2024). 14:22298

The cost of care for children hospitalized with respiratory syncytial virus (RSV) associated lower respiratory infection in Kenya.Nyiro, J. U. Nyawanda, B. O. Mutunga, M. Murunga, N. Nokes, D. J. Bigogo, G. Otieno, N. A. Lidechi, S. Mazoya, B. Jit, M. Cohen, C. Moyes, J. Pecenka, C. Baral, R. Onyango, C. Munywoki, P. K. Vodicka, E.
BMC Public Health, (2024). 24:2410

Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa.Owuor, D. C. de Laurent, Z. R. Oketch, J. W. Murunga, N. Otieno, J. R. Nabakooza, G. Chaves, S. S. Nokes, D. J. Agoti, C. N.
Sci Rep, (2024). 14:18987

Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, during the COVID-19 pandemic, 2019-2022.Lambisia, A. W. Murunga, N. Mutunga, M. Cheruiyot, R. Maina, G. Makori, T. O. Nokes, D. J. Agoti, C. N.
Gut Pathog, (2024). 16:2

Changes in the global hospitalisation burden of respiratory syncytial virus in young children during the COVID-19 pandemic: a systematic analysis.Cong, B. Koc, U. Bandeira, T. Bassat, Q. Bont, L. Chakhunashvili, G. Cohen, C. Desnoyers, C. Hammitt, L. L. Heikkinen, T. Huang, Q. S. Markic, J. Mira-Iglesias, A. Moyes, J. Nokes, D. J. Ploin, D. V. R. S. study group in Lyon Seo, E. Singleton, R. Wolter, N. Fu Yung, C. Zar, H. J. Feikin, D. R. Sparrow, E. G. Respiratory Virus Global Epidemiology, Network Nair, H. Li, Y. Promise investigators
Lancet Infect Dis, (2024). 24:361-374

Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons.Owuor, D. C. de Laurent, Z. R. Nyawanda, B. O. Emukule, G. O. Kondor, R. Barnes, J. R. Nokes, D. J. Agoti, C. N. Chaves, S. S.
Sci Rep, (2023). 13:22342

Symptom prevalence and secondary attack rate of SARS-CoV-2 in rural Kenyan households: A prospective cohort study.Gallagher, K. E. Nyiro, J. Agoti, C. N. Maitha, E. Nyagwange, J. Karani, A. Bottomley, C. Murunga, N. Githinji, G. Mutunga, M. Ochola-Oyier, L. I. Kombe, I. Nyaguara, A. Kagucia, E. W. Warimwe, G. Agweyu, A. Tsofa, B. Bejon, P. Scott, J. A. G. Nokes, D. J.
Influenza Other Respir Viruses, (2023). 17:e13185

New SARS-CoV-2 Omicron Variant with Spike Protein Mutation Y451H, Kilifi, Kenya, March-May 2023.Mwanga, M. J. Lambisia, A. W. Morobe, J. M. Murunga, N. Moraa, E. Ndwiga, L. Cheruiyot, R. Musyoki, J. Mutunga, M. Guzman-Rincon, L. M. Sande, C. Mwangangi, J. Bejon, P. Ochola-Oyier, L. I. Nokes, D. J. Agoti, C. N. Nyiro, J. Githinji, G.
Emerg Infect Dis, (2023). 29:2376-2379

Assessment of gestational age at antenatal care visits among Kenyan women to inform delivery of a maternal respiratory syncytial virus (RSV) vaccine in low- and middle-income countries.Nyiro, J. U. Nyawanda, B. O. Bukusi, E. Mureithi, M. W. Murunga, N. Nokes, D. J. Bigogo, G. Otieno, N. A. Opere, V. A. Ouma, A. Pecenka, C. Munywoki, P. K.
Wellcome Open Res, (2023). 8:154

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012-8.Makori, T. O. Bargul, J. L. Lambisia, A. W. Mwanga, M. J. Murunga, N. de Laurent, Z. R. Lewa, C. S. Mutunga, M. Kellam, P. Cotten, M. Nokes, D. J. Phan, M. Agoti, C. N.
Virus Evol, (2023). 9:vead025

Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013-2022).Lambisia, A. W. Makori, T. O. Mutunga, M. Cheruiyot, R. Murunga, N. Quick, J. Githinji, G. Nokes, D. J. Houldcroft, C. J. Agoti, C. N.
Virus Evol, (2023). 9:vead023

Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains.Nabakooza, G. Owuor, D. C. de Laurent, Z. R. Galiwango, R. Owor, N. Kayiwa, J. T. Jjingo, D. Agoti, C. N. Nokes, D. J. Kateete, D. P. Kitayimbwa, J. M. Frost, S. D. W. Lutwama, J. J.
Sci Rep, (2023). 13:5516

Estimating the cost-effectiveness of maternal vaccination and monoclonal antibodies for respiratory syncytial virus in Kenya and South Africa.Koltai, M. Moyes, J. Nyawanda, B. Nyiro, J. Munywoki, P. K. Tempia, S. Li, X. Antillon, M. Bilcke, J. Flasche, S. Beutels, P. Nokes, D. J. Cohen, C. Jit, M.
BMC Med, (2023). 21:120

Estimates of the national burden of respiratory syncytial virus in Kenyan children aged under 5 years, 2010-2018.Nyawanda, B. O. Murunga, N. Otieno, N. A. Bigogo, G. Nyiro, J. U. Vodicka, E. Bulterys, M. Nokes, D. J. Munywoki, P. K. Emukule, G. O.
BMC Med, (2023). 21:122