Anthony Scott

Assessing the Impact of SARS-CoV-2 Spike Mutations on Antibody Binding: A Comparative Assessment of the Wuhan and JN.1 Variants' Full-Length Spikes in a Multiplex Luminex Assay.Waweru G, Nyakundi R, Kutima B, Owuor S, Konyino G, Gitonga J, Lugano D, Maina A, Musyoki J, Ochola L, Omondi M, Kariuki CK, Ogongo P, Mwachari C, Shee F, Agoti C, Sande C, Uyoga S, Kagucia E, Agweyu A, Bejon P, Scott JAG, Warimwe GM, Ochola-Oyier LI, Nyagwange J
Viruses, (2025). 17:

Modelling the relative contribution of infection, routine vaccination and supplementary immunisation activities to measles seroconversion in Kenyan Children.Mburu C, Ojal J, Selim R, Ombati R, Akech D, Karia B, Tuju J, Sigilai A, Smits G, van Gageldonk P, van der Klis F, Kagucia E, Scott A, Adetifa I, Flasche S
PLoS Comput Biol, (2025). 21:e1013531

Modelling the relative contribution of infection, routine vaccination and supplementary immunisation activities to measles seroconversion in Kenyan Children.Mburu C, Ojal J, Selim R, Ombati R, Akech D, Karia B, Tuju J, Sigilai A, Smits G, Gageldonk PV, Klis FV, Kagucia E, Scott A, Adetifa I, Flasche S
PLoS Comput Biol, (2025). 21:e1013531

Pneumococcal carriage prevalence, serotype distribution, and vaccine coverage in Ethiopia 12 years after pneumococcal vaccine introduction.Bizuayehu HY, Kebede Y, Deressa M, Solomon E, Marami D, Karani A, Gardiner E, Dessie Y, Scott JAG, Gallagher KE
Vaccine, (2025). 64:127762

Major Causes of Perinatal and Paediatric Mortality in Sub-Saharan Africa and South Asia: Adjustment for Selection Bias in the CHAMPS Network.Vyas KJ, Muir JA, Madewell ZJ, Gupta PM, Blau DM, Arifeen SE, Gurley ES, Chowdhury AI, Islam KM, Rahman A, Scott JAG, Assefa N, Madrid L, Asefa YA, Abdullahi YY, Onyango D, Akelo V, Tippett-Barr BA, Aol G, Sow SO, Kotloff KL, Tapia MD, Keita AM, Chawla K, Bassat Q, Mandomando I, Nhacolo A, Sacoor C, Ogbuanu I, Kowuor D, Duduyemi B, Moseray A, Squire JS, Madhi S, Mahtab S, Adam Y, Wise A, Machemedza T, Whitney CG
Paediatr Perinat Epidemiol, (2025). :

The impact of 10-valent pneumococcal conjugate vaccine on the incidence of admissions to hospital with hypoxaemic and non-hypoxaemic pneumonia in Kenyan children.Haeusler IL, Kagucia EW, Bottomley C, Otiende M, Nyiro J, Scott JAG
PLOS Glob Public Health, (2025). 5:e0004888

Use of minimally invasive tissue sampling to determine the contribution of diarrheal diseases to under-five mortality and associated co-morbidities and co-infections in children with fatal diarrheal diseases in Africa and Bangladesh.Mutevedzi PC, Madewell ZJ, Kotloff KL, Bassat Q, Chirinda PJ, Cossa ACA, Xerinda EG, Akelo V, Mitei PK, Oele E, Omore R, Onyango D, Bangura J, Luke R, Moseray A, Ogbuanu IU, Sesay T, Assefa N, Libe TT, Madrid L, Yeshi MM, Scott JAG, Govender NP, Lala SG, Madhi SA, Mahtab S, Keita AM, Sanogo D, Sow SO, Tapia MD, El Arifeen S, Gurley ES, Barr BAT, Whitney CG, Blau DM, Mandomando I
PLOS Glob Public Health, (2025). 5:e0004772

Seroprevalence of Immunoglobulin G against measles and rubella over a 12-year period (2009-2021) in Kilifi, Kenya and the impact of the Measles-Rubella (MR) vaccine campaign of 2016.Mburu CN, Ojal J, Selim R, Ombati R, Akech D, Karia B, Tuju J, Sigilai A, Smits G, van Gageldonk PGM, van der Klis FRM, Flasche S, Kagucia EW, Scott JAG, Adetifa IMO
Vaccine, (2025). 61:127425

Post-mortem study of endemic human coronaviruses (HCoV-NL63, OC43, 229E and HKU-1) in deaths of children under five in low- and middle-income countries: Findings from the Child Health and Mortality Prevention Surveillance (CHAMPS) study.Baillie V, Dangor Z, Blau DM, Mahtab S, du Toit J, Assefa N, Oundo J, Kidanemariam ZT, Scott JAG, Ameh S, Ogbuanu IU, Ojulong J, Bunn J, Kotloff KL, Sow SO, Tapia MD, Keita AM, Garrine M, Mandomando I, Varo R, Xerinda EG, Rakislova N, Alam M, El Arifeen S, Gurley ES, Hossain MZ, Rahman A, Akelo V, Onyango C, Onyango D, Mutevedzi PC, Whitney CG, Bassat Q, Madhi SA
J Clin Virol, (2025). 178:105804

Epidemiology of Community-acquired Bacteremia Among Children One to Fifty-nine Months of Age Admitted to a Tertiary Hospital in Harar, Eastern Ethiopia.Edris Y, Ayana DA, Aiken AM, Mengesha G, Hassen FA, Ahmed F, Marami D, Getnet B, Assefa N, Scott JAG, Madrid L
Pediatr Infect Dis J, (2025). :

Misclassification of malaria as pneumonia in children in sub-Saharan Africa.Bottomley C, Kamau A, Awori JO, Driscoll AJ, Park DE, Sow SO, Tapia MD, Kotloff KL, Ebruke BE, Antonio M, Howie SRC, Hayes RJ, Scott JAG
Int J Epidemiol, (2025). 54:

Investigating the role of cytomegalovirus as a cause of stillbirths and child deaths in low and middle-income countries through postmortem minimally invasive tissue sampling.Velaphi S, Madewell ZJ, Tippett-Barr B, Blau DM, Rogena EA, Lala SG, Mahtab S, Swart PJ, Akelo V, Onyango D, Otieno K, Rogena EA, Were JA, Bassat Q, Carrilho C, Mandomando I, Torres-Fernandez D, Varo R, Luke R, Moses F, Nwajiobi-Princewill P, Ogbuanu IU, Ojulong J, El Arifeen S, Gurley ES, Assefa N, Gedefa L, Madrid L, Scott JAG, Wale H, Juma J, Keita AM, Kotloff KL, Sow SO, Tapia MD, Mutevedzi P, Whitney CG, Madhi SA
Clin Infect Dis, (2025). :ciaf098

Global impact of 10- and 13-valent pneumococcal conjugate vaccines on pneumococcal meningitis in all ages: the PSERENADE project.Yang Y, Knoll MD, Herbert C, Bennett JC, Feikin DR, Quesada MG, Hetrich MK, Zeger SL, Kagucia EW, Xiao M, Cohen AL, van der Linden M, du Plessis M, Yildirim I, Winje BA, Varon E, Valenzuela MT, Valentiner-Branth P, Steens A, Scott JA, Savrasova L, Sanz JC, Khan AS, Oishi K, Nzoyikorera N, Nuorti JP, Mereckiene J, McMahon K, McGeer A, Mackenzie GA, MacDonald L, Ladhani SN, Kristinsson KG, Kleynhans J, Kellner JD, Jayasinghe S, Ho PL, Hilty M, Hammitt LL, Guevara M, Gilkison C, Gierke R, Desmet S, De Wals P, Dagan R, Colzani E, Ciruela P, Chuluunbat U, Chan G, Camilli R, Bruce MG, Brandileone MC, Ampofo K, O'Brien KL, Hayford K
J Infect, (2025). 90:106426

Effect of mass campaigns with full and fractional doses of pneumococcal conjugate vaccine (Pneumosil) on the reduction of nasopharyngeal pneumococcal carriage in Niger: a three-arm, open-label, cluster-randomised trial.Coldiron ME, Soumana I, Baudin E, Langendorf C, Mamiafo Tchoula C, Brah S, Karani A, Gallagher KE, Kagucia EW, Scott JAG, Grais RF
Lancet Infect Dis, (2025). 24:S1473-3099

Comparative performance of the InBios SCoV-2 Detect (TM) IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations.Kutima B, Kagucia EW, Mwai K, Kimani M, Sigilai A, Mugo D, Karanja H, Gitonga JN, Karani A, Akech D, Toroitich M, Karia B, Tuju J, Ziraba AK, Bigogo G, Ochieng C, Onyango C, Lidechi S, Munywoki PK, Uyoga S, Adetifa IMO, Oyier LIO, Bejon P, Scott JAG, Agweyu A, Warimwe GM, Nyagwange J
Wellcome Open Res, (2024). 9:349

Profile: The Kenya Multi-Site Serosurveillance (KEMIS) collaboration.Kagucia EW, Voller S, Ziraba AK, Bigogo G, Munywoki PK, Makobu K, Nokes DJ, Nyagwange J, Orlendo C, Akech D, Sigilai A, Onyango C, Juma B, Herman-Roloff A, Munyua P, Apondi C, Lidechi S, Audi A, Ouma A, Aol G, Misore T, Nasimiyu C, Onyango D, Lo T, Kasera K, Jalang'o R, Kingwara L, Adetifa I, Etyang AO, Warimwe G, Agweyu A, Scott JAG
Gates Open Res, (2024). 8:60

Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, JN.1.4, and KP.3.1.1 using samples from two health demographic surveillance systems in Kenya.Lugano D, Kutima B, Kimani M, Sigilai A, Gitonga J, Karani A, Akech D, Karia B, Ziraba AK, Maina A, Lambisia A, Omuoyo D, Mugo D, Lucinde R, Owuor S, Konyino G, Newman J, Bailey D, Nduati E, Githinji G, Agoti CN, Bejon P, Scott JAG, Agweyu A, Kagucia W, Warimwe GM, Sande C, Ochola-Oyier LI, Nyagwange J
BMC Infect Dis, (2024). 24:1474

Serotype distribution of remaining invasive pneumococcal disease after extensive use of ten-valent and 13-valent pneumococcal conjugate vaccines (the PSERENADE project): a global surveillance analysis.Garcia Quesada M, Peterson ME, Bennett JC, Hayford K, Zeger SL, Yang Y, Hetrich MK, Feikin DR, Cohen AL, von Gottberg A, van der Linden M, van Sorge NM, de Oliveira LH, de Miguel S, Yildirim I, Vestrheim DF, Verani JR, Varon E, Valentiner-Branth P, Tzanakaki G, Sinkovec Zorko N, Setchanova LP, Serhan F, Scott KJ, Scott JA, Savulescu C, Savrasova L, Reyburn R, Oishi K, Nuorti JP, Napoli D, Mwenda JM, Munoz-Almagro C, Morfeldt E, McMahon K, McGeer A, Mad'arova L, Mackenzie GA, Eugenia Leon M, Ladhani SN, Kristinsson KG, Kozakova J, Kleynhans J, Klein NP, Kellner JD, Jayasinghe S, Ho PL, Hilty M, Harker-Jones MA, Hammitt LL, Grgic-Vitek M, Gilkison C, Gierke R, French N, Diawara I, Desmet S, De Wals P, Dalby T, Dagan R, Corcoran M, Colzani E, Chanto Chacon G, Castilla J, Camilli R, Ang M, Ampofo K, Almeida SCG, Alarcon P, O'Brien KL, Deloria Knoll M, Pserenade Team
Lancet Infect Dis, (2024). 24:445-456

Global impact of ten-valent and 13-valent pneumococcal conjugate vaccines on invasive pneumococcal disease in all ages (the PSERENADE project): a global surveillance analysis.Bennett JC, Deloria Knoll M, Kagucia EW, Garcia Quesada M, Zeger SL, Hetrich MK, Yang Y, Herbert C, Ogyu A, Cohen AL, Yildirim I, Winje BA, von Gottberg A, Viriot D, van der Linden M, Valentiner-Branth P, Suga S, Steens A, Skoczynska A, Sinkovec Zorko N, Scott JA, Savulescu C, Savrasova L, Sanz JC, Russell F, Ricketson LJ, Puentes R, Nuorti JP, Mereckiene J, McMahon K, McGeer A, Mad'arova L, Mackenzie GA, MacDonald L, Lepp T, Ladhani SN, Kristinsson KG, Kozakova J, Klein NP, Jayasinghe S, Ho PL, Hilty M, Heyderman RS, Hasanuzzaman M, Hammitt LL, Guevara M, Grgic-Vitek M, Gierke R, Georgakopoulou T, Galloway Y, Diawara I, Desmet S, De Wals P, Dagan R, Colzani E, Cohen C, Ciruela P, Chuluunbat U, Chan G, Camilli R, Bruce MG, Brandileone MC, Bigogo G, Ampofo K, O'Brien KL, Feikin DR, Hayford K, Pserenade Team
Lancet Infect Dis, (2024). 25:457-470

Contribution of malnutrition to infant and child deaths in Sub-Saharan Africa and South Asia.Madewell ZJ, Keita AM, Das PM, Mehta A, Akelo V, Oluoch OB, Omore R, Onyango D, Sagam CK, Cain CJ, Chukwuegbo C, Kaluma E, Luke R, Ogbuanu IU, Bassat Q, Kincardett M, Mandomando I, Rakislova N, Varo R, Xerinda EG, Dangor Z, du Toit J, Lala SG, Madhi SA, Mahtab S, Breines MR, Degefa K, Heluf H, Madrid L, Scott JAG, Sow SO, Tapia MD, El Arifeen S, Gurley ES, Hossain MZ, Islam KM, Rahman A, Mutevedzi PC, Whitney CG, Blau DM, Suchdev PS, Kotloff KL
BMJ Glob Health, (2024). 9: